(Protein language models can capture protein quaternary state - https://doi.org/10.1186/s12859-023-05549-w) -
(Similarity-assisted variational autoencoder for nonlinear dimension reduction with application to single-cell RNA sequencing data - https://doi.org/10.1186/s12859-023-05552-1) -
(G-Aligner: a graph-based feature alignment method for untargeted LC–MS-based metabolomics - https://doi.org/10.1186/s12859-023-05525-4) -
(DG-Affinity: predicting antigen–antibody affinity with language models from sequences - https://doi.org/10.1186/s12859-023-05562-z) -
(A novel two-way rebalancing strategy for identifying carbonylation sites - https://doi.org/10.1186/s12859-023-05551-2)